Want to dive deeper into each of these options (and plenty more) to discover which is the best Amazon FBA accounting software for you?

Good, because that’s exactly what’s coming up, my brand-building friend.

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How to choose the best accounting software for your Amazon business

There are a number of strong accounting software options for Amazon sellers to choose from.

The key to deciding which one is right for you involves a few things:

  1. Admin. How much are you willing to do on your end? If you’re happy to get your hands dirty with some finance admin, an automation tool like LinkMyBooks coupled with Quickbooks or Xero is perfect.
  2. Accountant. If you already have an accountant it’s best to discuss this with them as they will have a certain way of doing things. Finding the right accounting software for Amazon sales should be heavily influenced by their preferences.
  3. Budget. For most Amazon sellers, finance and bookkeeping is the last thing you want to be doing. So, if you have the budget, having finances completely managed by a CPA would be the dream solution.

To help you decide which accounting software is best for you, let’s break down each of the key categories.

Accounting Automation Tools

First up, one of the most important categories of Amazon accounting software.

These Amazon accounting automation tools connect your Amazon seller accounts to traditional bookkeeping software and ensure you are categorizing income and expenditure the right way.

#1: LinkMyBooks

LinkMyBooks allows you to connect your preferred sales channels in a few clicks and subsequently automate the majority of the Amazon accounting processes.

Most Amazon sellers when starting their eCommerce journey assume they can just account for biweekly disbursements as sales and be done with it.

The reality is far from that though as you are legally required to account for gross sales figures and any expenses. By simply lodging the disbursement amount as sales you are recording incorrect numbers.

LinkMyBooks syncs with Amazon Seller Central (and other platforms like Shopify and eBay) to pull in your gross sales figures along with all expenses.

Whereas Amazon reports expenses in a vast amount of random categories, LinkMyBooks groups these categories to enable clean, efficient, and transparent reporting of your numbers.

The LinkMyBooks accounting software is easy to use, even for those with no accounting background. I’ve been using this tool for years now, and it is honestly one of the most helpful tools I’ve ever used.

To get started, simply start a free trial, connect your Amazon seller central accounts and the software will pull in your historical data to enable proper bookkeeping to be carried out and accurate cash flow analysis performed.

LinkMyBooks was founded by UK sellers, and is particularly valuable for managing European marketplaces, but is not seller-location specific – you can use it wherever you are in the world.

Cost: From £13 / $17 USD / $26 AUD per month (scales with usage, free trial and discount available here)

#2: A2X

A2X is another accounting software for Amazon sellers that syncs with Amazon Seller Central accounts to automate bookkeeping processes and produce accurate financial reports.

Small business owners can leverage powerful accounting software to perform time-consuming tasks of importing sales reports and categorizing expenses.

Most Amazon sellers initially record their financials using cash basis accounting, but A2X gives the ability to record sales using accrual basis accounting.

Most professional accounting programs should offer this flexibility which becomes a key factor if you ever look to sell eCommerce businesses.

Buyers will be looking for accrual basis accounting in order to be able to accurately measure key performance indicators in your company’s profit and loss statement.

A2X also offers inventory management functionality with features such as inventory valuation reporting, and cost of goods recording.

The accounting software for Amazon is just the start, too. A2X integrates with Shopify, Walmart, Etsy, and eBay.

A2X is a well-respected name in the Amazon accounting software space and comes highly recommended.

It has been active for longer, and was actually the first accounting software I used when starting to sell on Amazon. However, when the above-mentioned LinkMyBooks launched, we moved over due to the large cost savings available.

Cost: $19/mo – $499/mo

Done-For-You Software & Service Tools

If you’d rather not have to carry out your own bookkeeping then there are other options available.

You can outsource this task to a trained virtual assistant bookkeeper or enlist the services of your accountant / CPA to carry out an end-to-end service for you.


You should always consult a qualified accountant with regard to annual filing, but day-to-day bookkeeping doesn’t always have to be carried out by a fully qualified accountant.

An accountant will generally have a higher level of training but relying on them for more entry-level online bookkeeping tasks will of course come at an additional cost.

A great solution that meets this tension somewhere in the middle is a done-for-you software & service combination.

#3: Osome

Osome is a new tech startup in the eCommerce accounting space that aims to automate your bookkeeping and dramatically reduce your accounting costs.

With dedicated daily accountant answers, Osome claim to be cheaper than an in-house accountant but better service than an outsourced CPA.

This software for Amazon sellers processes all transactions from within your Amazon account, along with other income and business expenses.

Amazon sellers can easily add documents such as invoices and receipts to the accounting software platform to ensure end-of-year filing is a breeze.

The Osome platform is designed to be an all-in-one Amazon FBA accounting software and as such online retailers won’t need any other software subscriptions to maintain the accounts for their Amazon FBA business.

With a growing number of accounting features inside this service, it’s well worth checking out in order to compare against other accounting software.


Osome is currently only available for UK and Singapore-based sellers.

Cost: Starts at £500/yr, save £110 with our exclusive discount.

#4: EcomBalance

EcomBalance is on a mission to help the eCommerce industry — sellers, software, agencies, and service providers — master their bookkeeping.

They take the time to get to know your eCommerce business and become an integral part of your team so you don’t have to worry about your bookkeeping.

It doesn’t matter if you’re selling on Amazon, Shopify, eBay, Etsy, or Walmart, EcomBalance’s bookkeepers specialize in eCommerce bookkeeping and can help you with their unique online accounting solution.

The team aims to set your books up right from the outset so that they are powered by proven processes and can easily be built upon.

You’ll work with a dedicated team of bookkeepers that provide fast communication and proactive insights into improving your financials and receive monthly analyses so you can know your numbers better and make smarter business decisions.

CostFully managed plans start at $250/month

Traditional Accounting Software

Amazon sellers looking for a more traditional bookkeeping set-up have a range of high-quality cloud-based accounting software options available to them.

#5: Xero

The cloud-based accounting software Xero is a great option for Amazon sellers who are looking for a more traditional bookkeeping setup.

Xero is easy to use and helps sellers stay on top of their finances with real-time updates and status alerts.

Additionally, Xero offers a wide range of features such as invoicing, bank reconciliation, and inventory management.

One of the main advantages of using Xero for Amazon accounting is that it integrates with a wide range of eCommerce platforms and online marketplaces, making it easy to keep track of all your sales and expenses in one place.

Cost: Plans start at $9/month

#6: QuickBooks Online

QuickBooks Online is an accounting software that can help Amazon sellers stay on top of their finances with real-time updates and status alerts.

QuickBooks Online has a lot of capabilities, including invoicing, bank reconciliation, and settings that help Amazon sellers track inventory for accurate reporting.

Both Xero and QuickBooks Online offer free trials, so Amazon sellers can try out the software before committing to a paid plan.

There isn’t a great deal of difference between the two most popular options, with each being in the running for the best accounting software for small businesses.

QuickBooks Online is a great alternative to QuickBooks Desktop which requires eCommerce sellers to download a full software suite to manage their business finances.

CostPlans start at $25/month

#7: GoDaddy Online Bookkeeping

GoDaddy Online Bookkeeping is a cost-effective tool for Amazon sellers who want to save time and money on their accounting.

With its easy-to-use interface and powerful features, it’s a solid option of accounting software for Amazon sellers.

Features include functionality to track inventory, conduct double-entry accounting, and creating reports on various Amazon marketplace sales.

GoDaddy Online Bookkeeping is a similar solution to Freshbooks accounting software with both being low-priced and easy to set up.

Cost: Starts at $4.99/month

#8: Microsoft Excel / Google Sheets

Microsoft Excel or Google Sheets can both be useful and cost-effective accounting tools for Amazon sellers.

By setting up a simple spreadsheet, sellers can track their expenses and income, as well as calculate their profit and loss.

This can help sellers stay on top of their finances and make sure they are making a profit on their Amazon sales.

While something like Excel can be a powerful and free accounting software tool for Amazon sellers, it also has some downsides. One downside is that it can be easy to make mistakes when tracking data in a spreadsheet.

Another downside is that it can be time-consuming to set up and use Excel for bookkeeping.

Most Amazon sellers would find the return on investment of a more sophisticated Amazon accounting software to be well worth it.

Cost: Google Sheets is available for free.

Amazon Financial Reporting Software

As an Amazon seller, you’ll no doubt be keeping a close eye on your sales. Refreshing your Amazon seller account app every five minutes when you first start selling is a totally natural obsession – don’t worry!

But whilst your self-discipline for frequency of sales checking will improve over time, you’ll want to keep a closer eye on your numbers than waiting a full month until your next profit and loss statement is ready.

That’s where dedicated Amazon reporting software tools come in.

These tools pull sales data from your Amazon Seller Central account to give you real-time updates on key numbers.

Whilst they aren’t a replacement for quality accounting software, these premium Amazon seller apps will certainly help you keep your finger on the pulse of your business.

#9: Sellerboard

Sellerboard is a powerful analytics dashboard that connects to your Amazon account in order to give up-to-date snapshots of profitability.

Its profit and loss reporting tool gives actionable insight to help you know what is working well, and what needs attention.

It also has a suite of other tools for functions like PPC and inventory tracking whilst giving multi-currency support and allowing multiple users to access the tool.

Amazon FBA sellers without prior accounting knowledge can take advantage of this easy-to-use tool to manage cash flow and improve sales.

Cost: $19/mo – $79/mo (Extended 2 month free trial here)

#10: Profits by Helium 10

helium 10 profits screenshot

Is it any surprise Helium 10 also have a tool for financial reporting?

This enterprise-level suite of tools really does have it all. Profits is a detailed analytics software for Amazon sellers that breaks down sales metrics by marketplace and by SKU.

It also features an inventory management tool that helps Amazon sellers stay in stock at all times.

Given the range of tools available in this competitively priced suite, small businesses around the world are putting them to great use to grow sales on Amazon.

Cost: From $39/month (Save 10% for life discount with code BBU10)

#11: Shopkeeper

Shopkeeper is a profit dashboard for Amazon sellers, offering support for multiple marketplaces.

It does the boring part of aggregating income and expenses for you, so you can focus on the fun part – making important decisions based on this data, to grow your Amazon business

Cost: From $20/month

Sales Tax Accounting Software

The world of online retail sales tax is somewhat of a mirky one.

Nexus this, liability that… it’s hard to know exactly what sales tax obligations you have as an Amazon seller.

Enter sales tax accounting software solutions!

#12: TaxJar

TaxJar is accounting software that helps Amazon sellers with tracking sales taxes and producing sales tax summaries in tax season.

The software will summarize all business transactions and automate sales tax calculation so Amazon FBA sellers can accurately report, remit and track sales tax.

Every small business needs to ensure they are tracking sales tax and that the sales tax collected is accurate and that they are not over (or under) paying.

TaxJar is arguably the best software solution for this task.

Cost: Not given, trial needed to access pricing.

Why do Amazon sellers need online bookkeeping software?

Amazon sellers can benefit significantly from using online bookkeeping software for several reasons:


Managing financial records manually can be time-consuming and prone to errors. Online bookkeeping software automates many accounting tasks, such as transaction categorization, expense tracking, and invoicing, saving Amazon sellers valuable time.

Accurate financial data

Amazon FBA accounting software automatically syncs with Amazon Seller Central, ensuring that sellers have accurate, up-to-date financial information. This reduces the risk of errors and helps sellers make informed business decisions.

Tax compliance

Online bookkeeping software typically includes features that simplify tax preparation, such as generating financial statements, tracking deductible expenses, and calculating sales tax liabilities. This can help Amazon sellers remain compliant with tax regulations and avoid potential penalties.

Improved cash flow management

Online bookkeeping software helps sellers monitor their cash flow by providing real-time financial data and reports. This enables them to make better-informed decisions regarding inventory management, pricing, and other key aspects of their business.


As an Amazon seller’s business grows, managing finances manually becomes increasingly challenging. Online bookkeeping software can scale with the business, accommodating more transactions, customers, and products without requiring additional resources.

Access to financial insights

Online bookkeeping software offers various reporting tools that provide valuable insights into a seller’s business performance. These insights can help sellers identify trends, uncover areas for improvement, and make data-driven decisions to grow their business.


Cloud-based bookkeeping software allows multiple users to access and work on financial data simultaneously. This facilitates collaboration between business partners or team members and ensures that everyone is on the same page regarding the company’s financial situation.

Overall, using online bookkeeping software can help an Amazon business streamline its financial management, maintain accurate records, stay compliant with tax regulations, and make better-informed decisions to grow its business.

Frequently Asked Accounting Software Questions

Amazon seller accounting software refers to third-party accounting solutions that are designed to help Amazon sellers manage their finances and accounting needs more efficiently. These software solutions typically integrate with Amazon’s Seller Central, enabling sellers to track sales, expenses, inventory, and other financial data seamlessly.

Amazon accounting software accesses Seller Central data using Amazon’s Marketplace Web Service (MWS) API. The API (Application Programming Interface) is a set of rules and protocols that allows different software applications to communicate with each other. In this case, the API enables the accounting software to securely access and exchange information with Amazon Seller Central.

To set up the integration between the accounting software and Seller Central, sellers need to follow the instructions within the specific accounting tool and grant permissions from within their Amazon account.

Yes, absolutely. We do this with our accountant. Set them up as a user in your Seller Central account and give them the appropriate user permissions so they can access your business reports.

It does, however, the data will not be presented in a manageable way right out of the box. This is why it is highly recommended to use a solution like LinkMyBooks which can categorize all transactions seamlessly and make the bookkeeping process far, far easier.

Choosing the best accounting software for your Amazon business

It’s clear there are a number of accounting software for Amazon sellers each with its own strengths and weaknesses.

As an Amazon seller, the first step in this decision is to decide how you want to manage your bookkeeping and accounting.

If you have an accounting background then you may decide an accounting tool like Xero or Quickbooks is the right option for you, and LinkMyBooks is the perfect integration for this setup.

But, if you need a bit more help with creating accurate financial reports that help grow your business, then perhaps more of a done-for-you service is the best option.

Only you can decide what is right for you, but in this article, we hope to have provided you with some sound insight on what the best tools for each option are.

May the cash flow be ever in your favor!


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